Publications

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1. Hybrid-illumination multiplexed Fourier ptychographic microscopy with robust aberration correction

   Shi Zhao, Haowen Zhou, Changhuei Yang

   Under review at JPhys Photonics, 2025

2. Analytic Fourier ptychotomography for volumetric refractive index imaging

   Zhenyu Dong*, Haowen Zhou*, Ruizhi Cao*, Oumeng Zhang, Shi Zhao, Pengfei Lyu, Ricard Alcalde, Changhuei Yang

   Nature Communications (in press), 2025

3. Digital defocus aberration interference for automated optical microscopy

   Haowen Zhou, Shi Zhao, Yujie Fan, Zhenyu Dong, Oumeng Zhang, Viviana Gradinaru, Changhuei Yang

   Under review at Nature Communications, 2025

4. AI-based approach to dissect the variability of mouse stem cell-derived embryo models

   Paolo Caldarelli, Leonie Deininger, Shi Zhao, Pratik Panda, Changhuei Yang, Ralf Mikut, et al.

   Nature Communications, 2025

5. Dome-APIC illumination design for high space-bandwidth product analytic imaging

   Siyu Lin, Haowen Zhou, Ruizhi Cao, Shi Zhao, Oumeng Zhang, Changhuei Yang

   Biomedical Optics Express, 2025

6. Efficient, gigapixel-scale, aberration-free whole slide scanner using angular ptychographic imaging with closed-form solution

   Shi Zhao*, Haowen Zhou*, Shuo Lin, Ruizhi Cao, Changhuei Yang

   Biomedical Optics Express, 2024

7. One-pot multi-frame denoising

   Linqi Jin, Qi Guo, Shi Zhao, Li Zhu, Qi Chen, Qi Ren, Yunzhi Lu

   International Journal of Computer Vision, 2024

8. Deep learning classification of ex vivo human colon tissues using spectroscopic optical coherence tomography

   William Y. Kendall, Qing Tian, Shi Zhao, Samin Mirmimachi, Eoin O'Kane, Andrew Joseph, Daniel Dufault, et al.

   Journal of Biophotonics, 2024