I am a PhD candidate in the Department of Electrical Engineering at Caltech, advised by Prof. Changhuei Yang. My research mainly focuses on:

  • Developing advanced computational imaging systems - Towards automated, high-resolution, wide-field, aberration-free, high-throughput microscopy
  • Implementing AI in biological and biomedical applications

My aspiration is to transition advanced imaging techniques from the lab into real-world applications with the aid of AI.

I am currently seeking internship opportunities for Summer 2026.

News

09/15/2025 – Our preprint "Hybrid-illumination multiplexed Fourier ptychographic microscopy with robust aberration correction" is now on arXiv.The paper is under review at JPhy Photonics.
08/20/2025 – Our preprint "Digital defocus aberration interference for automated optical microscopy" is now on arXiv. The paper is under review at Nature Communications.
06/12/2024 – I presented a poster on the Imaging Science Gordon Research Conference at Maine.
01/22/2024 – I passed the quanlification exam for Caltech EE department.
09/14/2023 – I'm glad to join Caltech EE as a PhD student, working with Prof. Changhuei Yang.

Selected Publications

Full publication list here.

Shi Zhao, Haowen Zhou, Changhuei Yang
arXiv 2025, under review at JPhy Photonics
Conventional Fourier ptychographic microscopy (FPM) and multiplexed FPM techniques suffer from limited acquisition speed and lack of aberration correction capacity. We present hybrid-illumination multiplexed Fourier ptychographic microscopy (HMFPM), which integrates analytic aberration extraction with the efficiency of multiplexed illumination. By combining a hybrid illumination strategy with a customized reconstruction algorithm that leverages both analytical and optimization methods, HMFPM substantially reduces the number of required measurements while maintaining robust aberration correction and stable convergence.
HMFPM System Demo Image
Haowen Zhou*, Shi Zhao*, Yujie Fan, Zhenyu Dong, Oumeng Zhang, Viviana Gradinaru, Changhuei Yang
arXiv 2025, under review at Nature Communications
We recently discovered a phenomenon that the digitally summed Fourier spectrum of two images acquired from two-angle illumination exhibits interference-like fringe modulation when the sample is out-of-focus. These digital fringes correlate directly with defocus through a physics-based relation. Based on this principle, we developed an automatic, efficient, and generalizable defocus detection method termed digital defocus aberration interference (DAbI).
DAbI System Demo Image
Shi Zhao*, Haowen Zhou*, Shuo Lin, Ruizhi Cao, Changhuei Yang
Biomedical Optics Express, 2024
We report a whole slide imaging system based on angular ptychographic imaging with a closed-form solution (WSIAPIC), which offers efficient, tens-of-gigapixels, large-FOV, aberration-free imaging. WSI-APIC utilizes oblique incoherent illumination for initial high-level segmentation, thereby bypassing unnecessary scanning of the background regions and enhancing image acquisition efficiency. A GPU-accelerated APIC algorithm analytically reconstructs phase images with effective digital aberration corrections and improved optical resolutions. An auto-stitching technique based on scale-invariant feature transform ensures the seamless concatenation of whole slide complex-field images.
WSI-APIC System Demo Image